SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03841

Signal sequence   MARASSSSSPPSPRLLLLLLVAVAATLLPEAAALGNFTAESRGARWRSRRARRRA

Length  55

Organism  Oryza sativa subsp. japonica (Rice)

UniProt ID  Q9FXT4,

Motif  1..55



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03841.cif

Structure  SPKB03841.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  5887.85924

Aliphatic index  96.18181818

Isoelectric point  12.86798795

Charge (pH=7)   8.001501432

Topological polar surface area  2554.34

Aromaticity  0.036363636

Average rotatable bonds  3.454545455

Number of hydrogen bond donors  96

Number of hydrogen bond acceptors  80

X logP energy  -30.5117

Hydropathy 



Literature Information


Title  alpha-Galactosidase from cultured rice (Oryza sativa L. var. Nipponbare) cells.

DOI  10.1016/s0031-9422(02)00368-0,

Publication Year  2002

PubMed ID  12423882,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.