SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03830

Signal sequence   MANQKGLHVVMMIITVWLLYAAPNIHG

Length  27

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q9C9G4,

Motif  1..27



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03830.cif

Structure  SPKB03830.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3021.69304

Aliphatic index  130

Isoelectric point  9.303064168

Charge (pH=7)   1.178657033

Topological polar surface area  1080.03

Aromaticity  0.074074074

Average rotatable bonds  3.555555556

Number of hydrogen bond donors  36

Number of hydrogen bond acceptors  39

X logP energy  -4.5343

Hydropathy 



Literature Information


Title  Arabidopsis ENDO2: its catalytic role and requirement of N-glycosylation for function.

DOI  10.1021/jf300945c,

Publication Year  2012

PubMed ID  22506810,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.