SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03775

Signal sequence   MVKLSNLLVATFGVLLVLNGCLA

Length  23

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  Q96318,

Motif  1..23



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03775.cif

Structure  SPKB03775.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2388.99584

Aliphatic index  177.826087

Isoelectric point  8.545189979

Charge (pH=7)   0.93571455

Topological polar surface area  856.18

Aromaticity  0.043478261

Average rotatable bonds  3.434782609

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  31

X logP energy  -4.5083

Hydropathy 



Literature Information


Title  Storage protein accumulation in the absence of the vacuolar processing enzyme family of cysteine proteases.

DOI  10.1105/tpc.016378,

Publication Year  2004

PubMed ID  14688293,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.