SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03629

Signal sequence   MRYLVISLFAVSLLMAGSALVGNA

Length  24

Organism  Nitratidesulfovibrio vulgaris (strain ATCC 29579 / DSM 644 / CCUG 34227 / NCIMB 8303 / VKM B-1760 / Hildenborough) (Desulfovibrio vulgaris)

UniProt ID  Q727P6,

Motif  1..24



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03629.cif

Structure  SPKB03629.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2497.05214

Aliphatic index  150.4166667

Isoelectric point  9.348807885

Charge (pH=7)   0.997130574

Topological polar surface area  918.53

Aromaticity  0.083333333

Average rotatable bonds  3.375

Number of hydrogen bond donors  33

Number of hydrogen bond acceptors  33

X logP energy  -6.05153

Hydropathy 



Literature Information


Title  Role of the tetrahemic subunit in Desulfovibrio vulgaris hildenborough formate dehydrogenase.

DOI  10.1021/bi0515366,

Publication Year  2005

PubMed ID  16274230,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.