SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03529

Signal sequence   MTKFSGNELRAELYRRAFLSYSVAPGALGMFGRSLLAKGARA

Length  42

Organism  Rhodobacter capsulatus (Rhodopseudomonas capsulata)

UniProt ID  Q52675,

Motif  1..42



Activity Information


Pathway  Tat

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Tat/SPI



Structure Information


PDB ID  1DMR,

Predicted Structure ID  SPKB03529.cif

Structure  SPKB03529.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4565.33744

Aliphatic index  79.28571429

Isoelectric point  11.47493984

Charge (pH=7)   4.999227092

Topological polar surface area  1868.47

Aromaticity  0.119047619

Average rotatable bonds  3.619047619

Number of hydrogen bond donors  69

Number of hydrogen bond acceptors  62

X logP energy  -18.32955

Hydropathy 



Literature Information


Title  Cloning and sequence analysis of the dimethylsulfoxide reductase structural gene from Rhodobacter capsulatus.

DOI  10.1016/0005-2728(96)00092-8,

Publication Year  1996

PubMed ID  8856102,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.