SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03113

Signal sequence   MIVLSVGSASSSPIVVVFSVALLLFYFSETSLG

Length  33

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  P33487,

Motif  1..33



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03113.cif

Structure  SPKB03113.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3421.04934

Aliphatic index  141.5151515

Isoelectric point  3.849982713

Charge (pH=7)   -1.001090992

Topological polar surface area  1225.33

Aromaticity  0.121212121

Average rotatable bonds  3.242424242

Number of hydrogen bond donors  44

Number of hydrogen bond acceptors  46

X logP energy  -9.4071

Hydropathy 



Literature Information


Title  Molecular analysis of an auxin binding protein gene located on chromosome 4 of Arabidopsis.

DOI  10.1105/tpc.4.2.193,

Publication Year  1992

PubMed ID  1321684,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.