SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB03002

Signal sequence   MHLHLRGICLVLAVASSSSSALA

Length  23

Organism  Bradyrhizobium diazoefficiens (strain JCM 10833 / BCRC 13528 / IAM 13628 / NBRC 14792 / USDA 110)

UniProt ID  P24059,

Motif  1..23



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB03002.cif

Structure  SPKB03002.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2336.79604

Aliphatic index  144.3478261

Isoelectric point  8.564795175

Charge (pH=7)   1.117824454

Topological polar surface area  923.93

Aromaticity  0

Average rotatable bonds  3.304347826

Number of hydrogen bond donors  35

Number of hydrogen bond acceptors  34

X logP energy  -9.79723

Hydropathy 



Literature Information


Title  Characterization of three soluble c-type cytochromes isolated from soybean root nodule bacteroids of Bradyrhizobium japonicum strain CC705.

DOI  10.1016/0378-1097(91)90344-a,

Publication Year  1991

PubMed ID  1663887,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.