SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB02662

Signal sequence   MLKKCVWLAVALCLCLWQFTMGTALA

Length  26

Organism  Thermosynechococcus vestitus (strain NIES-2133 / IAM M-273 / BP-1)

UniProt ID  P0A386,

Motif  1..26



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Cellular thylakoid membrane

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  1W5C,

Predicted Structure ID  SPKB02662.cif

Structure  SPKB02662.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2914.69764

Aliphatic index  127.6923077

Isoelectric point  8.520413618

Charge (pH=7)   1.811470084

Topological polar surface area  957.99

Aromaticity  0.115384615

Average rotatable bonds  3.576923077

Number of hydrogen bond donors  37

Number of hydrogen bond acceptors  37

X logP energy  -1.9107

Hydropathy 



Literature Information


Title  Ycf12 is a core subunit in the photosystem II complex.

DOI  10.1016/j.bbabio.2007.08.008,

Publication Year  2007

PubMed ID  17935689,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.