SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB02146

Signal sequence   MNDLNRLGRVGRWIAGAACLFLASAAHA

Length  28

Organism  Thioalkalivibrio nitratireducens (strain DSM 14787 / UNIQEM 213 / ALEN2)

UniProt ID  L0DSL2,

Motif  1..28



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB02146.cif

Structure  SPKB02146.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2955.45134

Aliphatic index  105

Isoelectric point  10.4383975

Charge (pH=7)   2.027355225

Topological polar surface area  1222.9

Aromaticity  0.071428571

Average rotatable bonds  3.392857143

Number of hydrogen bond donors  45

Number of hydrogen bond acceptors  39

X logP energy  -11.96909

Hydropathy 



Literature Information


Title  Molecular and catalytic properties of a novel cytochrome c nitrite reductase from nitrate-reducing haloalkaliphilic sulfur-oxidizing bacterium Thioalkalivibrio nitratireducens.

DOI  10.1016/j.bbapap.2005.12.021,

Publication Year  2006

PubMed ID  16500161,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.