SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB02118

Signal sequence   MRGDVRVHTASPIAAAWLLAVGLVAHA

Length  27

Organism  Allochromatium vinosum (strain ATCC 17899 / DSM 180 / NBRC 103801 / NCIMB 10441 / D) (Chromatium vinosum)

UniProt ID  D3RVD4,

Motif  1..27



Activity Information


Pathway  Sec

Natural/Artificial  Natural

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB02118.cif

Structure  SPKB02118.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2783.29024

Aliphatic index  126.6666667

Isoelectric point  10.40128591

Charge (pH=7)   1.180242343

Topological polar surface area  1085.84

Aromaticity  0.037037037

Average rotatable bonds  3.148148148

Number of hydrogen bond donors  39

Number of hydrogen bond acceptors  36

X logP energy  -8.49716

Hydropathy 



Literature Information


Title  Thiosulphate oxidation in the phototrophic sulphur bacterium Allochromatium vinosum.

DOI  10.1111/j.1365-2958.2006.05408.x,

Publication Year  2006

PubMed ID  16995898,

Patent ID  NA,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.