SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB00498

Signal sequence   MARKSLIFPVILHAVLLFSPPIYSAGHDYRDALRK

Length  35

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  NA,

Motif  1..35



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Artificial

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB00498.cif

Structure  SPKB00498.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  3996.77534

Aliphatic index  117.1428571

Isoelectric point  10.44400068

Charge (pH=7)   3.178394619

Topological polar surface area  1497.2

Aromaticity  0.114285714

Average rotatable bonds  3.6

Number of hydrogen bond donors  53

Number of hydrogen bond acceptors  51

X logP energy  -8.16729

Hydropathy 



Literature Information


Title  Vectors containing nucleic acids coding for Arabidopsis thaliana endo-1,4-beta-glucanase secretion signal peptide

DOI  NA,

Publication Year  2001

PubMed ID  NA,

Patent ID  US6323023B1,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.