SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB00493

Signal sequence   MGYSKTLAVSLFAVLLLAPAVLASDPDPLQDFCVADLDGKAVSVNGHPCKPMSE

Length  54

Organism  Hordeum vulgare

UniProt ID  NA,

Motif  1..54



Activity Information


Pathway  SRP-dependent

Natural/Artificial  Natural

Subcellular location  ER

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  NA,

Predicted Structure ID  SPKB00493.cif

Structure  SPKB00493.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  5603.52134

Aliphatic index  102.962963

Isoelectric point  4.290888412

Charge (pH=7)   -3.032784014

Topological polar surface area  2120

Aromaticity  0.055555556

Average rotatable bonds  3.259259259

Number of hydrogen bond donors  71

Number of hydrogen bond acceptors  78

X logP energy  -19.1642

Hydropathy 



Literature Information


Title  Plant secretory signal peptides and nectarins

DOI  NA,

Publication Year  1999

PubMed ID  NA,

Patent ID  US5939288A,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.