SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB00080

Signal sequence   MSQCVDGIKHLCTSVLGCFD

Length  20

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  NA,

Motif  1..20



Activity Information


Pathway  NA

Natural/Artificial  Natural

Subcellular location  Tonoplast

Secretion efficiency  NA

Type  NA



Structure Information


PDB ID  2ZFD,

Predicted Structure ID  SPKB00080.cif

Structure  SPKB00080.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2156.53264

Aliphatic index  87.5

Isoelectric point  5.400908486

Charge (pH=7)   -1.096432823

Topological polar surface area  849.3

Aromaticity  0.05

Average rotatable bonds  3.55

Number of hydrogen bond donors  32

Number of hydrogen bond acceptors  33

X logP energy  -9.2171

Hydropathy 



Literature Information


Title  Tonoplast localization sequence and its application

DOI  NA,

Publication Year  2013

PubMed ID  NA,

Patent ID  CN103254293A,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.