SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB00078

Signal sequence   MSQCVDGIKHLCTSVLGCF

Length  19

Organism  Arabidopsis thaliana (Mouse-ear cress)

UniProt ID  NA,

Motif  1..19



Activity Information


Pathway  NA

Natural/Artificial  Natural

Subcellular location  Tonoplast

Secretion efficiency  NA

Type  NA



Structure Information


PDB ID  2ZFD,

Predicted Structure ID  SPKB00078.cif

Structure  SPKB00078.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  2041.44404

Aliphatic index  92.10526316

Isoelectric point  7.179597755

Charge (pH=7)   -0.096879307

Topological polar surface area  782.9

Aromaticity  0.052631579

Average rotatable bonds  3.526315789

Number of hydrogen bond donors  30

Number of hydrogen bond acceptors  31

X logP energy  -8.1766

Hydropathy 



Literature Information


Title  Tonoplast localization sequence and its application

DOI  NA,

Publication Year  2013

PubMed ID  NA,

Patent ID  CN103254293A,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.