SPKB

Signal Peptide Knowledge Base

General Information


SPKB ID  SPKB00068

Signal sequence   MERCLATLVERLCVAVVERACALAMKYLLPTAAAGLLLLAAQPAMA

Length  46

Organism  Erwinia carotovora

UniProt ID  NA,

Motif  1..46



Activity Information


Pathway  Sec

Natural/Artificial  Artificial

Subcellular location  Periplasmic space

Secretion efficiency  NA

Type  Sec/SPI



Structure Information


PDB ID  1QOK,

Predicted Structure ID  SPKB00068.cif

Structure  SPKB00068.cif
Very high (pLDDT > 90)
Confident (90 > pLDDT > 70)
Low (70 > pLDDT > 50)
Very low (pLDDT < 50)
Loading PAE…
Expected Position Error (Ångströms)


Physicochemical Information


Molecular weight  4830.96474

Aliphatic index  136.0869565

Isoelectric point  8.040903036

Charge (pH=7)   0.816230138

Topological polar surface area  1782.64

Aromaticity  0.02173913

Average rotatable bonds  3.413043478

Number of hydrogen bond donors  65

Number of hydrogen bond acceptors  64

X logP energy  -11.28079

Hydropathy 



Literature Information


Title  Small peptide strengthening mold sequence of strong secretory signal peptide and application thereof

DOI  NA,

Publication Year  2013

PubMed ID  NA,

Patent ID  CN103254277A,



Faculty of Applied Sciences, Macao Polytechnic University, Macao, China.